What is ImageJ? ImageJ is a public domain, Java-based image processing program developed at the National Institutes of Health. ImageJ was designed with an open architecture that provides extensibility via Java plugins and recordable macros. Tutorials by microscope vendors. Karios Instruments has a number of interesting Fiji tutorials (the same page shows tutorials on using CellProfiler, too). Tutorials for software developers and scripters. See Development Tutorials. Presentations about ImageJ; Fiji YouTube channel; ImageJ videos and Fiji videos on YouTube. I'm now buliding macros to batchload these raw files and do other things. I have started a tutorial about this AstroImageJ software and later I will place my macros there to download. If you want to try them, have a backup of all your files if anything goes wrong, I'm in the begiining of this. Here is my AstroImageJ tutorial. Jan 01, 1970 switch to ImageJ, open an editor window (ctrl-shift-n), Paste (ctrl-v), select the editor's MacrosInstall Macros command, then select MacrosMacro 1 to run the first macro or MacrosMacros 2 to run the second. Macros in a macro set can communicate with each other using global variables. In the following example, the two. Macros are basically sequences of commands, written in some programming language (here ImageJ’s own macro language), which can be run automatically to make processing faster and easier. This chapter is far from an extensive introduction to macro-writing, but rather aims to introduce the main ideas quickly using a worked example.
Active3 years, 11 months ago
In a regular Java application, I have a BufferedImage that I would like to manipulate with ImageJ. I have a macro that is exactly what I need to execute. I suspect that the first step is to make an ImagePlus object, but I am not sure how to then run a macro on the ImagePlus object from within Java. Section 7.3 of the ImageJ tutorial found here says:
If you decide to use ImagePlus as your internal image format you can also use all plugins and macros from the ImageJ distribution as well as all other ImageJ plugins.
But does not indicate how to do so. If someone could explain how, or point me towards a resource that does, I would very much appreciate it.
dda5,53422 gold badges2020 silver badges3333 bronze badges
eiowmquieiowmqui
3 Answers
The following site describes ImageJ API with examples: http://albert.rierol.net/imagej_programming_tutorials.html#ImageJ programming basics
The examples include reading images, processing pixels etc. Well, I guess you will also need to use the API documentation a lot.
Hakan SerceHakan Serce10.5k33 gold badges2323 silver badges4343 bronze badges
Here is a sample code that opens an image, inverts it and saves it back:
And here's a sample code that shows how to manipulate an image to make it grayscale:
![Imagej Imagej](/uploads/1/2/6/3/126316044/905864718.jpg)
I hope it helps you get started :)
Imagej Macro Tutorial Free
MeysamMeysam7,2912222 gold badges9393 silver badges169169 bronze badges
Here is an opensource project implementation with imagej for photo sharing web app.
Use this as a reference to implement imagej apis in your application
MouliMouli